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1

The Santa Pola saltern as a model for studying the microbiota of hypersaline environments

Ventosa, Antonio, Fernández, Ana Beatriz, León, María José, Sánchez-Porro, Cristina, Rodriguez-Valera, Francisco

Journal:

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

2

Isolation and cultivation of Walsby's square archaeon

Henk Bolhuis, Evelien M. te Poele, Francisco Rodriguez-Valera

Journal:

Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 177 KB

english, 2004

3

Approaches to prokaryotic biodiversity: a population genetics perspective

Francisco Rodríguez-Valera

Journal:

Environmental Microbiology

Year:

2002

Language:

english

File:

PDF, 56 KB

english, 2002

4

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

Ghai, Rohit, Mizuno, Carolina Megumi, Picazo, Antonio, Camacho, Antonio, Rodriguez-Valera, Francisco

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 4.95 MB

english, 2013

5

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Luo, Chengwei, Tsementzi, Despina, Kyrpides, Nikos, Read, Timothy, Konstantinidis, Konstantinos T., Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

6

Encyclopedia of Metagenomics ||

Highlander, Sarah K., Rodriguez-Valera, Francisco, White, Bryan A.

Year:

2015

Language:

english

File:

PDF, 19.03 MB

english, 2015

7

Ecophysiological diversity of a novel member of the genusAlteromonas, and description ofAlteromonas mediterraneasp. nov.

Ivanova, Elena P., López-Pérez, Mario, Zabalos, Mila, Nguyen, Song Ha, Webb, Hayden K., Ryan, Jason, Lagutin, Kiril, Vyssotski, Mikhail, Crawford, Russell J., Rodriguez-Valera, Francisco

Journal:

Antonie van Leeuwenhoek

Year:

2015

Language:

english

File:

PDF, 730 KB

english, 2015

8

The discovery of CRISPR in archaea and bacteria

Mojica, Francisco J.M., Rodriguez-Valera, Francisco

Journal:

Year:

2016

Language:

english

File:

PDF, 663 KB

english, 2016

9

Evolution of rhodopsin ion pumps in haloarchaea

Adrian K Sharma, David A Walsh, Eric Bapteste, Francisco Rodriguez-Valera, W Ford Doolittle, R Thane Papke

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 470 KB

english, 2007

10

Numerous cultivated and uncultivated viruses encode ribosomal proteins

Mizuno, Carolina M., Guyomar, Charlotte, Roux, Simon, Lavigne, Régis, Rodriguez-Valera, Francisco, Sullivan, Matthew B., Gillet, Reynald, Forterre, Patrick, Krupovic, Mart

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.71 MB

english, 2019

11

Thousands of Novel Endolysins Discovered in Uncultured Phage Genomes

Fernández-Ruiz, Iris, Coutinho, Felipe H., Rodriguez-Valera, Francisco

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 7.42 MB

english, 2018

12

Diversity of Bacteria and Archaea in sulphate-reducing enrichment cultures inoculated from serial dilution of Zostera noltii rhizosphere samples

Ana Cifuentes, Josefa Antón, Rutger De Wit, Francisco Rodríguez-Valera

Journal:

Environmental Microbiology

Year:

2003

Language:

english

File:

PDF, 229 KB

english, 2003

13

General and Applied Aspects of Halophilic Microorganisms || Mode of Action of Halocins H4 and H6: Are They Effective Against the Adaptation to High Salt Environments?

Rodriguez-Valera, Francisco

Year:

1991

Language:

english

File:

PDF, 772 KB

english, 1991

14

The structure of the exopolysaccharide produced by the halophilic Archaeon Haloferax mediterranei strain R4 (ATCC 33500)

Haralambos Parolis, Lesley A.S. Parolis, Isabel F. Boán, Francisco Rodríguez-Valera, Göran Widmalm, M.Cristina Manca, Per-Erik Jansson, Ian W. Sutherland

Journal:

Carbohydrate Research

Year:

1996

Language:

english

File:

PDF, 608 KB

english, 1996

15

Molecular evidence supporting the existence of two major groups in uropathogenic Escherichia coli

Jesús García-Martínez, Antonio J. Martínez-Murcia, Francisco Rodríguez-Valera, Alfredo Zorraquino

Journal:

FEMS Immunology & Medical Microbiology

Year:

1996

Language:

english

File:

PDF, 1.10 MB

english, 1996

16

10.1038/35054537

López-García, Purificación, Rodríguez-Valera, Francisco, Pedrós-Alió, Carlos, Moreira, David

Journal:

Year:

2001

Language:

english

File:

PDF, 147 KB

english, 2001

17

General and Applied Aspects of Halophilic Microorganisms || Taxonomy of New Species of Moderately Halophilic Eubacteria

Rodriguez-Valera, Francisco

Year:

1991

Language:

english

File:

PDF, 851 KB

english, 1991

18

Expanding the Marine Virosphere Using Metagenomics

Mizuno, Carolina Megumi, Rodriguez-Valera, Francisco, Kimes, Nikole E., Ghai, Rohit, Rocha, Eduardo P. C.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

19

Effect of light on growing and starved populations of extremely halophilic bacteria

Francisco Rodriguez-Valera, Francisco J. Albert, Jane Gibson

Journal:

FEMS Microbiology Letters

Year:

1982

Language:

english

File:

PDF, 205 KB

english, 1982

20

Antagonistic interactions among halobacteria due to halocin production

Inmaculada Meseguer, Francisco Rodríguez-Valera, Antonio Ventosa

Journal:

FEMS Microbiology Letters

Year:

1986

Language:

english

File:

PDF, 415 KB

english, 1986

21

Thalassospira australicasp. nov. isolated from sea water

Ivanova, Elena P., López-Pérez, Mario, Webb, Hayden K., Ng, Hooi Jun, Dang, Thi Hoang Yen, Zhukova, Natalia V., Mikhailov, Valery V., Crawford, Russell J., Rodriguez-Valera, Francisco

Journal:

Antonie van Leeuwenhoek

Year:

2016

Language:

english

File:

PDF, 1016 KB

english, 2016

22

Role of Trehalose in Salinity and Temperature Tolerance in the Model Halophilic Bacterium Chromohalobacter salexigens

Reina-Bueno, Mercedes, Argandoña, Montserrat, Salvador, Manuel, Rodríguez-Moya, Javier, Iglesias-Guerra, Fernando, Csonka, Laszlo N., Nieto, Joaquín J., Vargas, Carmen, Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 457 KB

english, 2012

23

General and Applied Aspects of Halophilic Microorganisms || Halophily, Taxonomy, Phylogeny and Nomenclature

Rodriguez-Valera, Francisco

Year:

1991

Language:

english

File:

PDF, 473 KB

english, 1991

24

Genome reconstruction from metagenomic datasets reveals novel microbes in the brackish waters of the Caspian Sea

Mehrshad, Maliheh, Amoozegar, Mohammad Ali, Ghai, Rohit, Shahzadeh Fazeli, Seyed Abolhassan, Rodriguez-Valera, Francisco

Journal:

Applied and Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 3.65 MB

english, 2016

25

Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

Stewart, Frank J., Dalsgaard, Tage, Young, Curtis R., Thamdrup, Bo, Revsbech, Niels Peter, Ulloa, Osvaldo, Canfield, Don E., DeLong, Edward F., Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

26

Use of Thiobacillus ferrooxidans in a coupled microbiological–electrochemical system for wastewater detoxification

Arantxa López-López, Eduardo Expósito, Josefa Antón, Francisco Rodríguez-Valera, Antonio Aldaz

Journal:

Biotechnology and Bioengineering

Year:

1999

Language:

english

File:

PDF, 160 KB

english, 1999

27

Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis

ELENA IVARS-MARTÍNEZ, GIUSEPPE D’AURIA, FRANCISCO RODRÍGUEZ-VALERA, CRISTINA SÁNCHEZ-PORRO, ANTONIO VENTOSA, IAN JOINT, MARTIN MÜHLING

Journal:

Molecular Ecology

Year:

2008

Language:

english

File:

PDF, 451 KB

english, 2008

28

Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes

David Moreira, Francisco Rodríguez-Valera, Purificación López-García

Journal:

Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 899 KB

english, 2004

29

Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea

Arantxa López-López, Sergio G. Bartual, Lucas Stal, Olga Onyshchenko, Francisco Rodríguez-Valera

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 223 KB

english, 2005

30

Evolutionary relationships ofFusobacterium nucleatumbased on phylogenetic analysis and comparative genomics

Alex Mira, Ravindra Pushker, Boris A Legault, David Moreira, Francisco Rodríguez-Valera

Journal:

BMC Evolutionary Biology

Year:

2004

Language:

english

File:

PDF, 595 KB

english, 2004

31

Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi

Martin-Cuadrado, Ana-Belen, Pašić, Lejla, Rodriguez-Valera, Francisco

Journal:

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

32

Genomes of Abundant and Widespread Viruses from the Deep Ocean

Mizuno, Carolina Megumi, Ghai, Rohit, Saghaï, Aurélien, López-García, Purificación, Rodriguez-Valera, Francisco

Journal:

Year:

2016

Language:

english

File:

PDF, 3.29 MB

english, 2016

33

Replicating phages in the epidermal mucosa of the eel (Anguilla anguilla)

Carda-DiÃ©guez, Miguel, Mizuno, Carolina Megumi, Ghai, Rohit, Rodriguez-Valera, Francisco, Amaro, Carmen

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 4.27 MB

english, 2015

34

Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea

Kim, Jong-Geol, Kim, So-Jeong, Cvirkaite-Krupovic, Virginija, Yu, Woon-Jong, Gwak, Joo-Han, López-Pérez, Mario, Rodriguez-Valera, Francisco, Krupovic, Mart, Cho, Jang-Cheon, Rhee, Sung-Keun

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 981 KB

english, 2019

35

Explaining microbial population genomics through phage predation

Rodriguez-Valera, Francisco, Martín-Cuadrado, Ana-Belén, Rodriguez-Brito, Beltrán, Pasic, Lejla, Thingstad, T. Frede, Rohwer, Forest, Mira, Alex

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 6.01 MB

english, 2009

36

Adapting to environmental changes using specialized paralogs

Gabino Sanchez-Perez, Alex Mira, Gábor Nyirő, Lejla Pašić, Francisco Rodriguez-Valera

Journal:

Trends in Genetics

Year:

2008

Language:

english

File:

PDF, 774 KB

english, 2008

37

Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria

Ghai, Rohit, Mehrshad, Maliheh, Megumi Mizuno, Carolina, Rodriguez-Valera, Francisco

Journal:

The ISME Journal

Year:

2016

Language:

english

File:

PDF, 845 KB

english, 2016

38

Analysis of the Global Ocean Sampling (GOS) Project for Trends in Iron Uptake by Surface Ocean Microbes

Toulza, Eve, Tagliabue, Alessandro, Blain, Stéphane, Piganeau, Gwenael, Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

39

Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia

Ugalde, Juan A., Gallardo, Maria J., Belmar, Camila, Muñoz, Práxedes, Ruiz-Tagle, Nathaly, Ferrada-Fuentes, Sandra, Espinoza, Carola, Allen, Eric E., Gallardo, Victor A., Rodriguez-Valera, Francisco

Journal:

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

40

Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern

R. Thane Papke, Christophe J. Douady, W. Ford Doolittle, Francísco Rodríguez-Valera

Journal:

Environmental Microbiology

Year:

2003

Language:

english

File:

PDF, 255 KB

english, 2003

41

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

Martin-Cuadrado, Ana-Belen, Rodriguez-Valera, Francisco, Moreira, David, Alba, José C, Ivars-Martínez, Elena, Henn, Matthew R, Talla, Emmanuel, López-García, Purificación

Journal:

The ISME Journal

Year:

2008

Language:

english

File:

PDF, 567 KB

english, 2008

42

Conserved Amino Acid Sequence Features in the α Subunits of MoFe, VFe, and FeFe Nitrogenases

Glazer, Alexander N., Kechris, Katerina J., Rodriguez-Valera, Francisco

Journal:

Year:

2009

Language:

english

File:

PDF, 275 KB

english, 2009

43

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!

Vollmers, John, Wiegand, Sandra, Kaster, Anne-Kristin, Rodriguez-Valera, Francisco

Journal:

Year:

2017

Language:

english

File:

PDF, 4.97 MB

english, 2017

44

Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment

Haro-Moreno, Jose M., López-Pérez, Mario, de la Torre, José R., Picazo, Antonio, Camacho, Antonio, Rodriguez-Valera, Francisco

Journal:

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

45

Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes

López-Pérez, Mario, Haro-Moreno, Jose M., de la Torre, José R., Rodriguez-Valera, Francisco

Journal:

Environmental Microbiology

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

46

Random Amplified Polymorphic DNA of a Group of Halophilic Archaeal Isolates

Martinez-Murcia, Antonio J., Rodriguez-Valera, Francisco

Journal:

Systematic and Applied Microbiology

Year:

1994

Language:

english

File:

PDF, 5.84 MB

english, 1994

47

Tales from a thousand and one phages

Rodriguez-Valera, Francisco, Mizuno, Carolina Megumi, Ghai, Rohit

Journal:

Year:

2014

Language:

english

File:

PDF, 887 KB

english, 2014

48

Genomes of Two New Ammonia-Oxidizing Archaea Enriched from Deep Marine Sediments

Park, Soo-Je, Ghai, Rohit, Martín-Cuadrado, Ana-Belén, Rodríguez-Valera, Francisco, Chung, Won-Hyong, Kwon, KaeKyoung, Lee, Jung-Hyun, Madsen, Eugene L., Rhee, Sung-Keun, Brochier-Armanet, Celine

Journal:

Year:

2014

Language:

english

File:

PDF, 499 KB

english, 2014

49

Substrate Use of Pseudovibrio sp. Growing in Ultra-Oligotrophic Seawater

Schwedt, Anne, Seidel, Michael, Dittmar, Thorsten, Simon, Meinhard, Bondarev, Vladimir, Romano, Stefano, Lavik, Gaute, Schulz-Vogt, Heide N., Rodriguez-Valera, Francisco

Journal:

Year:

2015

Language:

english

File:

PDF, 931 KB

english, 2015

50

Prevalence and microdiversity of Alteromonas macleodii-like microorganisms in different oceanic regions

Jesús García-Martínez, Silvia G. Acinas, Ramon Massana, Francisco Rodríguez-Valera

Journal:

Environmental Microbiology

Year:

2002

Language:

english

File:

PDF, 673 KB

english, 2002

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